Revision History
| Date | Change |
|---|---|
| 2024/01/23 | Update the example in "5.2.3.3. MPI job" |
| 2023/10/18 | Update the example in "7.1.3. GROMACS" |
| 2023/08/18 | Update the example in "7.1.3. GROMACS" |
| 2023/07/10 | Update the example in "7.1.4. LAMMPS" |
| 2023/04/14 | Update "7.1.5. NAMD" to be suitable for NAMD 3.0b2 |
| 2023/04/06 | Add an explanation of apptainer in "7.6.11. Singularity" |
| 2023/03/15 | Add C++ example of "7.4.8. clang" |
| 2022/12/27 | Update the examples of "7.4.6. DeePMD-kit" |
| 2022/12/22 | Update "6. ISV application" |
| 2022/12/16 | Add "7.4.6.1.2. DeePMD-kit + LAMMPS 2 nodes" |
| 2022/12/13 | Add "7.4.6. DeePMD-kit" |
| 2022/12/07 | Remove description of load balancer of "2.2. Login" |
| 2022/09/09 | Update the example script of "7.1.4. LAMMPS" |
| 2022/08/23 | Update the example script of "7.1.7. QUANTUM ESPRESSO" |
| 2022/05/31 | Add alphafold/2.2.0 in "7.6.12. Alphafold" |
| 2022/04/12 | Update the example script of "7.1.5. NAMD" |
| 2022/04/05 | miscellaneous updates for version up |
| 2022/01/26 | Removed infromation about non-commercial license from "7.6.12. Alphafold" |
| 2022/01/25 | Added supplemental explanation to "5.2. Job submission" |
| 2021/12/13 | Add version 2.1.1 into "7.6.12. Alphafold" |
| 2021/11/12 | Add "7.1.7. QUANTUM ESPRESSO" |
| 2021/11/04 | Update "7.6.12 Alphafold" to be able to use a specific version |
| 2021/09/20 | Update "2.5. How to check TSUBAME points" |
| 2021/08/19 | Add how to update the repository in "7.6.12. Alphafold" |
| 2021/08/18 | Update user restrictions for "5.4.3. Interactive queue" |
| 2021/08/01 | Add "7.6.12. Alphafold" |
| 2021/04/06 | Various updates for maintenance in Apr 2021 (5.4.3. Interactive queue, etc.) |
| 2021/01/20 | Add a note for one container job in "5.2.3.5. Container job" |
| 2020/11/17 | Add singularity into the list in "7. Freeware", update example ussages in "7.6.11. Singularity" |
| 2020/11/17 | Add MobaXterm usage in "7.6.1. turbovnc" and add an exmple use of VirtualGL |
| 2020/11/06 | Add an explanation of Rq and Rr state in "5.2.5. Job status" |
| 2020/10/09 | Update the example of fakeroot in "7.6.11. Singularity" |
| 2020/08/05 | Add an info about omitting the key pair in "2.2. Login" |
| 2020/06/01 | Add an example use of paraview with multiple GPUs in "7.5.2. ParaView" |
| 2020/05/25 | Update an example use of cp2k in "7.1.6. CP2K" |
| 2020/05/18 | Update an example use of lammps in "7.1.4. LAMMPS" |
| 2020/04/30 | Update "5.4.1 X forwarding" |
| 2020/04/22 | Add t3-user-info compute ars in "5.3. Reserve compute nodes" |
| 2020/04/22 | Replace openmpi/2.1.2-opa10.9-t3 with openmpi/3.1.4-opa10.10-t3 in "4.6.5. GPUDirect RDMA" |
| 2020/04/09 | Merge https://www.t3.gsic.titech.ac.jp/node/129 into "5.2.4.1. Trial run" |
| 2020/04/07 | Add a notice of the size of array job in "5.2.8. Array Job" |
| 2020/04/07 | Update memory limitation in "5.1.1.1. Available resource type" |
| 2020/02/28 | Add "4.4. PGI compiler" |
| 2020/02/05 | Add a notice of shebang in "5.2.2. Creating job script" |
| 2020/01/17 | Add how to view own processes when ssh'ed to compute node in "5.5. SSH login to the compute node" |
| 2019/12/16 | Add an explanation of Foundation and ESI in "7.2.1. OpenFOAM" |
| 2019/12/06 | Update "5.4.3. Interactive queue" |
| 2019/12/03 | Add "7.6.1.1. turbovnc + VirtualGL" |
| 2019/11/29 | Add "7.4.7. clang" |
| 2019/11/29 | Add "7.6.1. turbovnc" |
| 2019/11/12 | Add "5.4.3. Interactive queue" |
| 2019/10/21 | Update some examples for fakeroot option in "7.6.10. Singularity" |
| 2019/10/04 | Add some examples for fakeroot option in "7.6.10. Singularity" |
| 2019/09/27 | Update a link in "5.3. Reserve compute nodes" |
| 2019/08/02 | Update the configuration of "5. Job scheduler" |
| 2019/07/31 | Repalce f_node with s_core in the example of 5.2.3.1. serial job/GPU job |
| 2019/07/30 | Move numerical GPU libraries from PGI compiler manual to 7.3 |
| 2019/07/17 | Delete "5.4. Checkpointing", add "7.5.9. DMTCP" |
| 2019/07/10 | Modified "5.3. Interactive job" to include how to terminate job |
| 2019/06/12 | Add "5.8.5 Connection to the network applications" |
| 2019/06/10 | Update "4.5.3. MPI Environment with CUDA" and "4.5.5. GPUDirect RDMA" for OPA10.9 |
| 2019/06/07 | Add some explanations of the job script in "5.2.2 Creating job script" |
| 2019/05/31 | Add "2.2.1. Restrictions for heavy work in login nodes" |
| 2019/05/30 | Changed documenting system Minor changes to expressions |
| 2019/05/20 | Modify "5.5 Reservation service" |
| 2019/05/15 | Update the link of "7.1.4 LAMMPS" and "7.1.5 NAMD" |
| 2019/03/29 | Add "5.8 Container job" Modify "5.6.1 Local scratch area" |
| 2019/01/25 | Modify references due to chapter number change |
| 2019/01/17 | Modify Chapter name, order, category |
| 2019/01/16 | Modify "4.2.2 Creating Job Script" Modify "4.6.1 Home Directory" |
| 2018/12/03 | Add "3.5.1.GPU COMPUTE MODE" Modify "4.6.4.Shared scratch area" |
| 2018/10/26 | Modify "4.1. Available resource type" |
| 2018/09/19 | Modify "5. ISV application" to fit the current environment |
| 2018/09/06 | Add "6.5.9 singularity" |
| 2018/08/23 | Modify "6.3 Caffe, Chainer and Tensorflow" |
| 2018/07/27 | Modify "5.8 Gaussian" and "5.9 GaussView" |
| 2018/05/25 | Add "2.5 How to check TSUBAME points" Add note to "4.6.1 Home Directory", "4.6.2 High-speed storage area" |
| 2018/05/09 | Remove the list of available modules, add a link to the web page |
| 2018/04/05 | Add "2.4 Changing default login shell" Add "3.5 GPU Environment" Add note job priority to "4.2.2 Creating job script" |
| 2018/01/23 | Add "4.5 Reservation service" |
| 2018/01/12 | Add note to "4.2 Job submission" Add note to "4.3.1 x-forwarding" Add "4.4 Signal Notification/Checkpinting" Add note to "4.5 Storage system" |
| 2017/10/26 | Removed "5.12.4 User authentication" |
| 2017/09/25 | Add "4.3.1 x-forwarding" |
| 2017/09/14 | Add note CIFS volume display to "2.4 Storage service(CIFS)" |
| 2017/09/11 | Add login node memory limit to "2.2 Login" Add note CIFS volume display to "2.4 Storage service(CIFS)" Add usage method to "4.4.4 Shared scratch area" |
| 2017/09/06 | Second |
| 2017/08/23 | First |